Results from the OGCM and LM suggest that the 40-50-day sea surface height anomaly (SSHA) and thermocline variability within 3oS-3oN are equatorial Kelvin waves forced by the 40-50-day winds, which also exhibit 40-50-day spectral peaks along the Atlantic equator for the period of interest in both QuikSCAT and PIRATA data. The SSHA and thermocline variations are determined from the first and second baroclinic mode Kelvin waves excited by the zonal wind stress, with the second baroclinic mode playing a more important role. Away from the equator (3o-5oN), oceanic variability at 40-50-day periods result mainly from the TIWs. Further analysis is needed to understand the origin of the 40-50-day winds, themocline variability on SST and its feedback to winds. This study may have an important implication to Atlantic Nino of 2002 (R. Fu, person. commu., 2006), when strong intraseasonal thermocline variability precedes its onset.