Crop-specific NEE and GPP time series are calculated based on results of the footprint climatology and the classified CO2 flux measurements using light response curve methods (rectangular and non-rectangular hyperbola). The presented methodology is used to derive summer and winter crop specific CO2 exchange time series. The results show that within the footprint area, the relative contribution and spatial distribution of summer and winter crops is variable among the years, which may influence the measured signal due to the different timing of the intensive carbon uptake period and harvest. Indeed, the crop specific CO2 fluxes are markedly different for each year, and exhibit strong correlation with the crop specific NDVI time series. The reconstructed, crop specific NEE time series are compared to yield data from the region. The crop specific annual NEE sums reveal a good correlation with county scale winter wheat and maize yield (dominant winter and summer crops in the region). However, the results may be biased due to local climatic effects (especially local precipitation events) impacting local growth and hence tower measurements. These local effects would not be reflected in county scale yield statistics. Hence, the crop specific tower NEE are more representative for local conditions.