The GOES-17 observatory, which is part of the NOAA GOES-R Series constellation of weather satellites, was launched on 1 March 2018. Comparisons of the calibrated data from the two GOES-17 Magnetometers shows a bias error correlated to events where the EUs are subjected to a highly dynamic thermal environment. To characterize the error, spacecraft heaters were used to quickly elevate the EU temperatures at the same time GOES-17 was co-located with GOES-15 during a drift maneuver. This allowed the GOES-15 Magnetometer data to be used as a baseline. The test indicated that the GOES-17 bias error is largely due to a significant delay between when the temperature is measured and when the bias is affected. This time delay in the response was characterized using time periods immediately following North-South maneuvers during which the EUs rapidly cool. As a result a mitigation method for the bias error was developed.