In this work we examine whether a state-of-the-art GCM with reasonable representations of both the MJO and QBO can capture the MJO-QBO link. We demonstrate that, in free-running mode, the modeled MJO-QBO connection is weaker than the observed and not statistically robust. However, the signals associated with the model’s QBO are weaker than observed around the tropical tropopause. This bias could explain the lack of simulated QBO influence on the MJO. To resolve this and examine more directly whether the stratosphere modulates the MJO, we conduct a series of experiments in which the model’s stratospheric winds are nudged to ensure a better representation of the QBO in the tropopause region. We then examine whether these nudged simulations capture the MJO-QBO link. We also present plans to expand this preliminary work to include several other models, including forecast models and another free-running general circulation model, in a more coordinated intercomparison which examines whether models with nudged stratospheric states capture any effect of the QBO on the MJO.