The average vertical profiles of temperature, humidity, wind and geopotential height, and the associated diurnal cycles during the Visviri I and Visviri II field experiments are compared with those obtained from the 03, 09, 15 and 21 hour (local time) NCEP re-analysis at the closest grid point (17.50 °S, 70.00 °W). The re-analisis are able to capture the major features in the vertical structure of these variables and also the interannual changes from the relatively wet period in Visviri I to the much dried conditions in Visviri II. Nevertheless, there are some significant discrepancies both in the strenght and timing of the diurnal cycle and particularly in the westward transport of water vapor across the Andes, that is significantly under estimated by the re-analysis.